| Protein ZmOrphan108 | |
|---|---|
|
ZmOrphan108 is a protein in the Orphans family.
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| Information | |
| Orphans Name: | ZmOrphan108 |
| Species: | Maize |
| Orphans Family: | Orphans |
| Gene Name(Synonym): | |
| Uniprot ID: | B4FNA0 |
| Subgenome: | 1 |
Protein ZmOrphan108
ZmOrphan108 is a protein in the Orphans family.
| Overview of domains present in v5 transcripts | |
|---|---|
| PF08879 | |
| Zm00001eb256500_T002 |  |
Protein-DNA Interactions
Meme Logos for Maize v4 Gene IDs
| Gene ID | Type | MEME Logo | Sequence | FIMO | Position |
|---|---|---|---|---|---|
| Zm00001d018235 | DAPseq |  |
sequence | fimo | position |
| Zm00001d018235 | DAPseq |  |
sequence | fimo | position |
| Zm00001d018235 | ChIPseq |  |
sequence | fimo | position |
| Zm00001d018235 | PChIPseq |  |
sequence | fimo | position |
Interactions where ZmOrphan108 is the regulator
Interactions where ZmOrphan108 is the target
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Zm00001eb256500_T002 from maize genome v5
Amino Acid Sequence
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MRIRRRPPGQPLPYSSSVTNDSAADLGDGRSSSSSSALIRRPALSPQDGAVERSTGLVGAQQQQQQGPADGHSSLENGLH
RHVPEPVTMALQAGERLCSGNGVGAAVAMATTTTATAGAKATKQRHRQTETNKQDTGGGVKRAARGPGVLMEGSRCSRKN
GRGWRCSQPTLVGYALCQYHLGKGRTKSGSAVDGGGRGRGPGQLGRTEHANKTSAAADVPPAQSVQHC
MRIRRRPPGQPLPYSSSVTNDSAADLGDGRSSSSSSALIRRPALSPQDGAVERSTGLVGAQQQQQQGPADGHSSLENGLH
RHVPEPVTMALQAGERLCSGNGVGAAVAMATTTTATAGAKATKQRHRQTETNKQDTGGGVKRAARGPGVLMEGSRCSRKN
GRGWRCSQPTLVGYALCQYHLGKGRTKSGSAVDGGGRGRGPGQLGRTEHANKTSAAADVPPAQSVQHC
MRIRRRPPGQPLPYSSSVTNDSAADLGDGRSSSSSSALIRRPALSPQDGAVERSTGLVGAQQQQQQGPADGHSSLENGLH
RHVPEPVTMALQAGERLCSGNGVGAAVAMATTTTATAGAKATKQRHRQTETNKQDTGGGVKRAARGPGVLMEGSRCSRKN
GRGWRCSQPTLVGYALCQYHLGKGRTKSGSAVDGGGRGRGPGQLGRTEHANKTSAAADVPPAQSVQHC
MRIRRRPPGQPLPYSSSVTNDSAADLGDGRSSSSSSALIRRPALSPQDGAVERSTGLVGAQQQQQQGPADGHSSLENGLH
RHVPEPVTMALQAGERLCSGNGVGAAVAMATTTTATAGAKATKQRHRQTETNKQDTGGGVKRAARGPGVLMEGSRCSRKN
GRGWRCSQPTLVGYALCQYHLGKGRTKSGSAVDGGGRGRGPGQLGRTEHANKTSAAADVPPAQSVQHC
MRIRRRPPGQPLPYSSSVTNDSAADLGDGRSSSSSSALIRRPALSPQDGAVERSTGLVGAQQQQQQGPADGHSSLENGLH
RHVPEPVTMALQAGERLCSGNGVGAAVAMATTTTATAGAKATKQRHRQTETNKQDTGGGVKRAARGPGVLMEGSRCSRKN
GRGWRCSQPTLVGYALCQYHLGKGRTKSGSAVDGGGRGRGPGQLGRTEHANKTSAAADVPPAQSVQHC
| Secondary Structure Color Code | |
|---|---|
| BEND | region with high backbone curvature without specific hydrogen bonding |
| HELX_LH_PP_P | left-handed polyproline helix |
| HELX_RH_3T_P | right-handed 3-10 helix |
| HELX_RH_AL_P | right-handed alpha helix |
| HELX_RH_PI_P | right-handed pi helix |
| STRN | beta strand |
| TURN_TY1_P | type I turn |
| UNDETERMINED | no data available |
| Domains Present | |
|---|---|
| PF08879 |
|
| Hover here to show all domains | |
Nucleotide Sequence
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TCATTGCATTTACTGATTCCCATAA...
TCATTGCATTTACTGATTCCCATAAATAAATGCGTCCACGAGCCATAAAAAGGCCAACCAAAACCAAGGAAGCAACCAAACCAACGCACACAAAAGCCTCCCCACTCCCCGAGACCCCCCCTCCTCCTTCGTTTTGCACCCTCCCCAAATCTGCACTACTCCCCTCTCCCTCGTCCTTCCTCCGCCCCGCCCCGCCCATGAGGATCAGGAGGCGGCCTCCGGGCCAGCCTCTGCCCTACTCCTCCTCGGTAACAAATGATTCGGCCGCGGATCTCGGGGACGGCCGCTCCTCCTCCTCCTCGTCGGCGCTCATCAGGCGCCCGGCATTGTCGCCGCAGGACGGTGCGGTGGAGCGCAGCACGGGTCTGGTGGGTGCGCAACAGCAGCAGCAACAGGGGCCTGCAGATGGCCACAGCAGCCTAGAGAACGGACTCCATCGCCACGTGCCGGAGCCGGTGACGATGGCCCTGCAGGCCGGAGAGCGTCTCTGCAGCGGCAACGGCGTCGGCGCAGCAGTGGCAATGGCTACGACGACGACAGCAACAGCGGGCGCGAAGGCCACGAAGCAGCGGCATCGGCAGACAGAGACAAATAAGCAGGACACCGGCGGCGGCGTGAAGAGGGCGGCGCGGGGCCCAGGCGTGCTGATGGAGGGGTCGCGGTGCAGCCGGAAGAACGGCCGCGGGTGGCGCTGCAGCCAGCCGACGCTGGTGGGCTACGCACTCTGCCAGTACCACCTCGGCAAGGGCCGCACCAAGAGCGGGAGCGCCGTGGACGGGGGCGGGCGCGGGCGCGGCCCCGGCCAGCTCGGCCGCACCGAGCACGCGAACAAAACCTCCGCCGCCGCGGACGTGCCGCCGGCCCAGAGCGTGCAGCACTGCTAGGGGACGCGAGATTCTTGGACATATCGATCGTAATTCTTTTGTTGCGTTTCTAAACATGTTGTGTTTCACTTTTGACTTGACTCCTCTCGATTCAGCGGCGCATGATCGGGAGGGAGGGAGGGACAGTGCACTGAGCGAGGGAGCATTTGCTGCTGCTCAGATTACTTAGTAGTA
GRMZM2G134552_T01 from maize genome v3
Amino Acid Sequence
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MYDQEKTRLCQISQCRSINLLASVILVLCLLYGITRARALCSLENGLHRHVPEPVTMALQAGERLCSGNGVGAAVAMATT
TTATAGAKATKQRHRQTETNKQDTGGGVKRAARGPGVLMEGSRCSRKNGRGWRCSQPTLVGYALCQYHLGKGRTKSGSAV
DGGGRGRGPGQLGRTEHANKTSAAADVPPAQSVQHC
Nucleotide Sequence
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AACCAAACCAACGCACACAAAAGCC...
AACCAAACCAACGCACACAAAAGCCTCCCCACTCCCCGAGACCCCCCCTCCTCCTTCGTTTTGCACCCTCCCCAAATCTGCACTACTCCCCTCTCCCTCGTCCTTCCTCCGCCCCGCCCCGCCCATGAGGATCAGGAGGCGGCCTCCGGGCCAGCCTCTGCCCTACTCCTCCTCGGTAACAAATGATTCGGCCGCGGATCTCGGGGACGGCCGCTCCTCCTCCTCCTCGTCGGCGCTCATCAGGCGCCCGGCATTGTCGCCGCAGGACGGTGCGGTGGAGCGCAGCACGGGTCTGGTGGGTGCGCAACAGCAGCAGCAACAGGGGCCTGCAGATGGCCACAGCAGGTATGTGATGAACGCGAACTGAGATCGAACCGTGACAGCCAGGAGCAGAAAGTGGTGATGCTGCCTGTGCCTGCTGTTGTGTGGCATCCGTTTTGCTGTCGTTGGGCAGGCTTGCGATGGCATGGCATGGCTGTGGGGATTTTTTACGAATAGAAATCTTAAAAAAGGAAAGGATCCAAGGCCCCCCTTTTTATTATTGTTGTTATTATCTCAAGGGCTTGGCCGATTGGGTTCACTGTTTCACATTACTCTCTAGTGGGCAATGCCAGTCCAATCGATCTCACTTGCTTGCCAGACAAAGCCCTCAGCCTCATGTTGTAGGTCGTGTGTGGAGCGAGCCGGCCAGCCACTAGATGCCACCGTTATGTGCATGCACGCGACATCTATCGATCTATCTATGCAGTCAGTGCAACCTCTTTCATTCGATCCGGACCTTCCTTGCTTGATCGCCTTGCGTCGTCGTCCATGGCCTTTCTATCTATCCTGTACGAGTGCAACTGGGTCATTCCATCTGTATGAGTGCAAGTGCAACTCGGGTGCTCTGGGAAACATGCATGTGCGTGCCGCATCATATATGGGAAAGGGAAACACTACTACTTCGCTTGCACATTGCACCTTTTTTTTTGTGTGTGTGTGTGTGTTTCTGTCATGAGGCATTAGTGCTTTTGGCGTTGCATGCATCCATGCCCGGCCGGCCCGCTTGGAGTTGCATCGATGCGCTCAGAAGATGATCAAGTGTACGTACGGATCGGAGAGGGGGCCTGCTCTGGCCTCCATCGAGCGTAGCATCCACTCAAAGGCCAACATCTTATTTATAGGTTCCTCTCGCCATTGTCTCCGGCATGCATGTATGATCAAGAGAAAACCCGACTGTGCCAAATTTCACAATGCCGTTCCATCAATCTACTAGCATCAGTTATCCTTGTGCTGTGCTTACTGTATGGTATCACGCGCGCGCGCGCACTTTGCAGCCTAGAGAACGGACTCCATCGCCACGTGCCGGAGCCGGTGACGATGGCCCTGCAGGCCGGAGAGCGTCTCTGCAGCGGCAACGGCGTCGGCGCAGCAGTGGCAATGGCTACGACGACGACAGCAACAGCGGGCGCGAAGGCCACGAAGCAGCGGCATCGGCAGACAGAGACAAATAAGCAGGACACCGGCGGCGGCGTGAAGAGGGCGGCGCGGGGCCCAGGCGTGCTGATGGAGGGGTCGCGGTGCAGCCGGAAGAACGGCCGCGGGTGGCGCTGCAGCCAGCCGACGCTGGTGGGCTACGCACTCTGCCAGTACCACCTCGGCAAGGGCCGCACCAAGAGCGGGAGCGCCGTGGACGGGGGCGGGCGCGGGCGCGGCCCCGGCCAGCTCGGCCGCACCGAGCACGCGAACAAAACCTCCGCCGCCGCGGACGTGCCGCCGGCCCAGAGCGTGCAGCACTGCTAGGGGACGCGAGATTCTTGGACATATCGATCGTAATTCTTTTGTTGCGTTTCTAAACATGTTGTGTTTCACTTTTGACTTGACTCCTCTCGATTCAGCGGCGCATGATCGGGAGGGAGGGAGGGACAGTGCACTGAGCGAGGGAGCATTTGCTGCTGCTCAGATT
GRMZM2G134552_T02 from maize genome v3
Amino Acid Sequence
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MRIRRRPPGQPLPYSSSVTNDSAADLGDGRSSSSSSALIRRPALSPQDGAVERSTGLVGAQQQQQQGPADGHSSLENGLH
RHVPEPVTMALQAGERLCSGNGVGAAVAMATTTTATAGAKATKQRHRQTETNKQDTGGGVKRAARGPGVLMEGSRCSRKN
GRGWRCSQPTLVGYALCQYHLGKGRTKSGSAVDGGGRGRGPGQLGRTEHANKTSAAADVPPAQSVQHC
Nucleotide Sequence
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AACCAAACCAACGCACACAAAAGCC...
AACCAAACCAACGCACACAAAAGCCTCCCCACTCCCCGAGACCCCCCCTCCTCCTTCGTTTTGCACCCTCCCCAAATCTGCACTACTCCCCTCTCCCTCGTCCTTCCTCCGCCCCGCCCCGCCCATGAGGATCAGGAGGCGGCCTCCGGGCCAGCCTCTGCCCTACTCCTCCTCGGTAACAAATGATTCGGCCGCGGATCTCGGGGACGGCCGCTCCTCCTCCTCCTCGTCGGCGCTCATCAGGCGCCCGGCATTGTCGCCGCAGGACGGTGCGGTGGAGCGCAGCACGGGTCTGGTGGGTGCGCAACAGCAGCAGCAACAGGGGCCTGCAGATGGCCACAGCAGCCTAGAGAACGGACTCCATCGCCACGTGCCGGAGCCGGTGACGATGGCCCTGCAGGCCGGAGAGCGTCTCTGCAGCGGCAACGGCGTCGGCGCAGCAGTGGCAATGGCTACGACGACGACAGCAACAGCGGGCGCGAAGGCCACGAAGCAGCGGCATCGGCAGACAGAGACAAATAAGCAGGACACCGGCGGCGGCGTGAAGAGGGCGGCGCGGGGCCCAGGCGTGCTGATGGAGGGGTCGCGGTGCAGCCGGAAGAACGGCCGCGGGTGGCGCTGCAGCCAGCCGACGCTGGTGGGCTACGCACTCTGCCAGTACCACCTCGGCAAGGGCCGCACCAAGAGCGGGAGCGCCGTGGACGGGGGCGGGCGCGGGCGCGGCCCCGGCCAGCTCGGCCGCACCGAGCACGCGAACAAAACCTCCGCCGCCGCGGACGTGCCGCCGGCCCAGAGCGTGCAGCACTGCTAGGGGACGCGAGATTCTTGGACATATCGATCGTAATTCTTTTGTTGCGTTTCTAAACATGTTGTGTTTCACTTTTGACTTGACTCCTCTCGATTCAGCGGCGCATGATCGGGAGGGAGGGAGGGACAGTGCACTGAGCGAGGGAGCATTTGCTGCTGCTCAGATT
Zm00001d018235_T001 from maize genome v4
Amino Acid Sequence
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MRIRRRPPGQPLPYSSSVTNDSAADLGDGRSSSSSSALIRRPALSPQDGAVERSTGLVGAQQQQQQGPADGHSSLENGLH
RHVPEPVTMALQAGERLCSGNGVGAAVAMATTTTATAGAKATKQRHRQTETNKQDTGGGVKRAARGPGVLMEGSRCSRKN
GRGWRCSQPTLVGYALCQYHLGKGRTKSGSAVDGGGRGRGPGQLGRTEHANKTSAAADVPPAQSVQHC
Nucleotide Sequence
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AACCAAACCAACGCACACAAAAGCC...
AACCAAACCAACGCACACAAAAGCCTCCCCACTCCCCGAGACCCCCCCTCCTCCTTCGTTTTGCACCCTCCCCAAATCTGCACTACTCCCCTCTCCCTCGTCCTTCCTCCGCCCCGCCCCGCCCATGAGGATCAGGAGGCGGCCTCCGGGCCAGCCTCTGCCCTACTCCTCCTCGGTAACAAATGATTCGGCCGCGGATCTCGGGGACGGCCGCTCCTCCTCCTCCTCGTCGGCGCTCATCAGGCGCCCGGCATTGTCGCCGCAGGACGGTGCGGTGGAGCGCAGCACGGGTCTGGTGGGTGCGCAACAGCAGCAGCAACAGGGGCCTGCAGATGGCCACAGCAGCCTAGAGAACGGACTCCATCGCCACGTGCCGGAGCCGGTGACGATGGCCCTGCAGGCCGGAGAGCGTCTCTGCAGCGGCAACGGCGTCGGCGCAGCAGTGGCAATGGCTACGACGACGACAGCAACAGCGGGCGCGAAGGCCACGAAGCAGCGGCATCGGCAGACAGAGACAAATAAGCAGGACACCGGCGGCGGCGTGAAGAGGGCGGCGCGGGGCCCAGGCGTGCTGATGGAGGGGTCGCGGTGCAGCCGGAAGAACGGCCGCGGGTGGCGCTGCAGCCAGCCGACGCTGGTGGGCTACGCACTCTGCCAGTACCACCTCGGCAAGGGCCGCACCAAGAGCGGGAGCGCCGTGGACGGGGGCGGGCGCGGGCGCGGCCCCGGCCAGCTCGGCCGCACCGAGCACGCGAACAAAACCTCCGCCGCCGCGGACGTGCCGCCGGCCCAGAGCGTGCAGCACTGCTAGGGGACGCGAGATTCTTGGACATATCGATCGTAATTCTTTTGTTGCGTTTCTAAACA
Zm00001eb256500_T001 from maize genome v5
Amino Acid Sequence
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MRIRRRPPGQPLPYSSSVTNDSAADLGDGRSSSSSSALIRRPALSPQDGAVERSTGLVGAQQQQQQGPADGHSSALGTQR
TTWKII
Nucleotide Sequence
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AAGAAACTGCTCCAAGATCTCACAC...
AAGAAACTGCTCCAAGATCTCACACACACCACCCCCGCCCTCATTGCATTTACTGATTCCCATAAATAAATGCGTCCACGAGCCATAAAAAGGCCAACCAAAACCAAGGAAGCAACCAAACCAACGCACACAAAAGCCTCCCCACTCCCCGAGACCCCCCCTCCTCCTTCGTTTTGCACCCTCCCCAAATCTGCACTACTCCCCTCTCCCTCGTCCTTCCTCCGCCCCGCCCCGCCCATGAGGATCAGGAGGCGGCCTCCGGGCCAGCCTCTGCCCTACTCCTCCTCGGTAACAAATGATTCGGCCGCGGATCTCGGGGACGGCCGCTCCTCCTCCTCCTCGTCGGCGCTCATCAGGCGCCCGGCATTGTCGCCGCAGGACGGTGCGGTGGAGCGCAGCACGGGTCTGGTGGGTGCGCAACAGCAGCAGCAACAGGGGCCTGCAGATGGCCACAGCAGTGCTCTAGGGACACAGCGCACTACATGGAAGATCATATAAGAGAAGGAGAAGAAGGGGACAATGATCACACGTGAAGCAAATAGCAAAGGGTGTTTGATCTTATAATCCAGGAACATTGAACTTGGCCACATTACTTGTTTCGGGAACATTCGTTTCATTCTGGGAACATGGAAACAATCTTGTTCCCATAATGTTCAAATCTTGTTTTAGTAACATACCACGTACTAAGTTTCAGTTCGTTGACCCCGTCGATTTGAGAATCAGGTTACTAAGTGTATGATCCTCTAGCCCACACATGTGGTAAGGGCAGCATAGAGATGACAAATGCCAACAAAAGTGAGGAAATTATCACCACGCAAG
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